GitHub

NanoAnalysis is a large scale, ML-driven analysis of inorganic nanoparticles in pre-clinical cancer research.

conda create -n NanoAna python=3.9 pandas conda activate NanoAna conda install scikit-learn conda install -c conda-forge py-xgboost conda install -c conda-forge shap conda install tqdm Alternatively, ...
PNAS

Unified molecular approach for spatial epigenome, transcriptome, and cell lineages

Contributed by Howard Y. Chang; received November 19, 2024; accepted February 20, 2025; reviewed by Jellert Gaublomme and David A. Quigley The spatial organization of cells within tissues plays a ...
eLife

Correlates of protection against African swine fever virus identified by a systems immunology approach

Dissecting protective versus detrimental immune responses uncovers biomarkers and mechanisms that can inform the rational design and evaluation of live attenuated vaccines against African swine fever ...
GitHub

Fast, sensitive and accurate integration of single-cell data with Harmony

For Python users, check out the harmonypy package by Kamil Slowikowski. Harmony is designed to be user-friendly and supports some SingleCellExperiment and Seurat R analysis pipelines. Alternatively, ...